miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|18612271|gb|BM491340.1|BM491340 CTTGATTTTTGCNNNCATGATCTACTATGCCGAGCGGATCGGAGCNNAGACGTCTGACTCCAGCGGGAGCGACCCGACTC
ACTTTAAGAACATCCCCATCGGGTTCTGGTGGGCCGTGGTCACGATGACGACGCTGGGCTATGGTGATATGTACCCCAAG
ACCTGGTCGGGCATGGTGGTGGGGGCTCTGTGTGCGCTGGCCGGGGTGCTCACCATCGCCATGCCCGTGCCCGTCATTGT
CAATAACTTTGGGATGTACTATTCGTTGGCCATGGCCAAGCAGAAGCTGCCAAAGAAGAAGAAAAAGCATATACCCCGTC
CGGCCCCGATGGACTCCCCCACCTACTGCAAATCTGAGGAGAACTCCCCCCGCAACAGCACCCAGAGCGACACTTGCCCC
TTGGCGGTAGAGGAAGGGGTGGCTGAGCGGAAGCGGTCAGACTCCAAGCAGAACGGTGAGNNNNACGTGGTGCTGTCAGA
CGAGGAGCAGCCGCTGTCCCCATCCGACGAGGAGAAGCGNNNCATGCGGCGCTCCAGCACCCGGG




Most similar to sp|Q03721|KCNC4_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q84QU8|PPT2_ORYSJ Phosphoenolpyruvate/phosphate translocator 2,
           chloroplastic OS=Oryza sativa subsp. japonica GN=PPT2
           PE=2 SV=1
          Length = 407

 Score =  111 bits (278), Expect(2) = 3e-35
 Identities = 62/97 (63%), Positives = 63/97 (64%)
 Frame = +3

Query: 216 LHARPLAAGIASSSRGPAAVAARSLGRXXXXXXXXXISPNXXXXXXXXXXXXXXXXXXXX 395
           LHARPLAAGIASSSRGPAAVAARSLGR         ISP+                    
Sbjct: 34  LHARPLAAGIASSSRGPAAVAARSLGRLLLLPPPPPISPDRAGRGRARHVACGAAAGDAK 93

Query: 396 XXXXXSGLAKTLQLGALFGLWYLFNIYFNIYNKQVLK 506
                SGLAKTLQLGALFGLWYLFNIYFNIYNKQVLK
Sbjct: 94  AEEEESGLAKTLQLGALFGLWYLFNIYFNIYNKQVLK 130



 Score = 57.4 bits (137), Expect(2) = 3e-35
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = +2

Query: 137 FGLVRPCPARPPLQLGPGSSSCRPM 211
           FGLVRPCPARPPLQLGPGSSSCRP+
Sbjct: 8   FGLVRPCPARPPLQLGPGSSSCRPI 32


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q03721|KCNC4_HUMAN Potassium voltage-gated channel subfamily C
           member 4 OS=Homo sapiens GN=KCNC4 PE=1 SV=2
          Length = 635

 Score =  270 bits (689), Expect = 5e-72
 Identities = 138/188 (73%), Positives = 151/188 (80%), Gaps = 7/188 (3%)
 Frame = +2

Query: 2   LIFAXMIYYAERIGAXTSDSSGSDPTHFKNIPIGFWWAVVTMTTLGYGDMYPKTWSGMVV 181
           LIFA MIYYAERIGA  SD  G+D T FKNIPIGFWWAVVTMTTLGYGDMYPKTWSGM+V
Sbjct: 393 LIFATMIYYAERIGARPSDPRGNDHTDFKNIPIGFWWAVVTMTTLGYGDMYPKTWSGMLV 452

Query: 182 GALCALAGVLTIAMPVPVIVNNFGMYYSLAMAXXXXXXXXXXHIPRPAPMDSPTYCKSEE 361
           GALCALAGVLTIAMPVPVIVNNFGMYYSLAMA          H+PRPA ++SP YCKSEE
Sbjct: 453 GALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKRKKHVPRPAQLESPMYCKSEE 512

Query: 362 NSPRNSTQSDTCPLAVEEGVAERKRSDSKQNGEXXVVLSDEE-----QPL--SPSDEEKR 520
            SPR+ST SDT P A EEG+ ERKR+DSKQNG+   VLSDEE     QPL  SP+ EE+R
Sbjct: 513 TSPRDSTCSDTSPPAREEGMIERKRADSKQNGDANAVLSDEEGAGLTQPLASSPTPEERR 572

Query: 521 XMRRSSTR 544
            +RRS+TR
Sbjct: 573 ALRRSTTR 580